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Revealing Crystal Defects with Low-Dose SED and HPT‑100 Plasma Cleaning

Defects inside molecular crystals called dislocations can affect how materials perform in electronics, pharmaceuticals, or coatings. Until now, imaging these defects has been hard because the microscopes needed too much electron energy, which damages fragile organic crystals.

A team from the Bragg Centre at the University of Leeds published a Natural Materials letter on March 3, 2025, introducing a low-dose, single-exposure scanning electron diffraction (SED) technique. This method captures diffraction patterns while scanning and uses them to map lattice distortions around dislocations, without damaging the sample. The team published their findings in a letter of Microscopics crystallographic analysis of dislocations in molecular crystals.

Researchers used gentle treatment with Henniker Plasma HPT-100 to clean TEM grids before the sample transfer. That step gently removed the surface contaminants ensuring that the captured low-sode SED images are not obscured or altered by contaminants. 

 

[Methods] The single-crystal films were transferred onto lacey-carbon-film transmission electron microscopy (TEM) support grids (EM Resolutions) by placing the grid under the film and lifting to catch the film on the TEM grid. Before the transfer process, the TEM grids were treated with an oxygen–argon (25:75) plasma for 10 s using an HPT-100 plasma treatment system (Henniker Plasma). [1]


What did the researchers find?

The researchers discovered that by using their new low-dose, single-exposure scanning electron diffraction (SED) method, they were able to directly observe and characterise individual dislocations - tiny defects like edge, screw, and mixed types, in fragile molecular crystals at approximately 1–2 nanometre resolution.

Key findings include:

  • They identified the precise Burgers vectors and slip systems of dislocations without needing prior knowledge of the crystal structure.

  • Demonstrated this technique across various organic crystals (optics, pharmaceuticals, waxes), proving its versatility.

  • Used an ultra‑low electron dose (~5 e⁻/Ų), protecting sensitive crystals from damage while maintaining image clarity.

  • The approach paves the way for routine nanoscale defect mapping, used for improving material performance in electronics, drug formulations, and more.

 


The Role of Henniker's HPT-100 Plasma Cleaner

The HPT‑100 plasma cleaner was used by the researchers at the University of Leeds as part of their sample preparation workflow, something that was important for the success of the study.

Researchers cleaned their TEM grids before the sample transfer using Henniker’s HPT‑100 plasma system, which:

  • Removed nanometre-thin layers of surface residue

  • Enabled true atomic-level imaging of dislocations without introducing artefacts

Without this step, the electron diffraction patterns would likely have been obscured or altered by contaminants.


Keywords

  • Molecular crystals
  • Dislocations
  • Crystal defects
  • Burgers Vector
  • Slip system
  • Lattice distortion
  • Electro diffraction
  • Scanning electron diffraction (SED)
  • Single-exposure microscopy
  • Nanometre resolution

References

Readers are referred to the original print, available through the provided [1] link, or click the link below for further details on the Henniker Plasma HPT-100.

[1] Microscopic crystallographic analysis of dislocations in molecular crystals

 

 

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Vivid Dx Blue and transparent logo

"In 2024, we needed a plasma cleaner for rapid prototyping and PDMS microfluidic bonding. Henniker Plasma quickly identified the right system and provided practical PDMS bonding guidance. The system was delivered within 8 days, enabling us to start R&D earlier than planned. Same-day technical support and protocols have greatly accelerated our research."

Aaron Teo - Vivid Dx

Vividdx

"The technical team at Henniker are very knowledgeable and supportive and always approachable. I have found it a pleasure to work with them."

Simon Baxter - BAE Systems, MAI

BAE

"Henniker guided us to choose the most suitable plasma unit for our application, ensured an accelerated delivery time & guided us through the very easy setup. We obtained quality results with their unit within minutes of setup & consistent results thereafter. The support they have provided has been rapid and helpful."

Dr Ravi Desai - Making Lab, Francis Crick Institute

Francis Crick Institute

"Henniker provided our team with excellent service during the course of our work together, the plasma cleaner arrived quickly and was installed with ease, giving us visible results from the outset and confirming that we made the right decision in choosing a local UK manufacturer."

Dr Panagiotis Manesiotis BSc MRSC - Queen’s University Belfast

Queens Uni Belfast

"Our customers and operations demand reliability at every level and were a key factor in our decision to choose a UK based manufacturer of plasma treatment equipment."

Tom Doak - Trak Microwave

Queens Uni Belfast

"Henniker’s after sales support is first class. They have always been extremely responsive if we have ever had need to call on them."

Steve Rackham - Teledyne

Teledyne

"Henniker’s plasma systems have delivered tangible benefits to us right from day one. The team there are very easy to work with."

Ian Bruce - Coopervision

Coopervision

"Henniker really stood out, both in their product range and technical knowledge. They are a great company to work with."

Karthik Nair - University of Bradford

University of Bradford

"We are very impressed with the ease of use and reliability of our plasma unit and were producing results within minutes of setting it up."

Dr Neil Wilson - Warwick University

Warwick University

"Our collaborative work with the team at Henniker was a very positive experience and one that we look forward to developing further."

Ewen Kellar - TWI

TWI

"Henniker provided a tailored product to match our exact requirements. They are a pleasure to work with."

Dr Will Shu - Heriot Watt University

Heriot Watt University